IL_8R55_183

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8R55|1|Y|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_183 not in the Motif Atlas

Homologous match to IL_7RQB_111

Geometric discrepancy: 0.187

The information below is about IL_7RQB_111

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8R55|1|Y|C|15
8R55|1|Y|G|16
*
8R55|1|Y|C|63
8R55|1|Y|A|64
8R55|1|Y|G|65

Current chains

Chain Y

5S rRNA (112-MER)

Nearby chains

Chain X

Large subunit ribosomal RNA; LSU rRNA