IL_8R55_187
3D structure
- PDB id
- 8R55 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacillus subtilis MutS2-collided disome complex (stalled 70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.57 Å
Loop
- Sequence
- CGAUGGUAG*UGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8R55_187 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.3576
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8R55|1|Y|C|69
8R55|1|Y|G|70
8R55|1|Y|A|71
8R55|1|Y|U|72
8R55|1|Y|G|73
8R55|1|Y|G|74
8R55|1|Y|U|75
8R55|1|Y|A|76
8R55|1|Y|G|77
*
8R55|1|Y|U|95
8R55|1|Y|G|96
8R55|1|Y|A|97
8R55|1|Y|G|98
8R55|1|Y|A|99
8R55|1|Y|G|100
8R55|1|Y|U|101
8R55|1|Y|A|102
8R55|1|Y|G|103
Current chains
- Chain Y
- 5S rRNA (112-MER)
Nearby chains
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
- Chain j
- Large ribosomal subunit protein uL16
- Chain u
- Large ribosomal subunit protein bL27
Coloring options: