IL_8R55_188

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_188 not in the Motif Atlas

Geometric match to IL_3RW6_004

Geometric discrepancy: 0.205

The information below is about IL_3RW6_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8R55|1|Y|U|78
8R55|1|Y|C|79
8R55|1|Y|G|80
*
8R55|1|Y|C|92
8R55|1|Y|U|93
8R55|1|Y|G|94

Current chains

Chain Y

5S rRNA (112-MER)

Nearby chains

Chain X

Large subunit ribosomal RNA; LSU rRNA

Chain j

Large ribosomal subunit protein uL16

Chain x

Large ribosomal subunit protein uL30