IL_8R6C_031

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R6C_031 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2782

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8R6C|1|A|C|658
8R6C|1|A|U|659
8R6C|1|A|C|660
*
8R6C|1|A|G|745
8R6C|1|A|A|746
8R6C|1|A|A|747
8R6C|1|A|G|748

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain O

Small ribosomal subunit protein uS15