IL_8R6C_071

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R6C_071 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.047

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8R6C|1|a|C|239
8R6C|1|a|C|240
8R6C|1|a|A|241
8R6C|1|a|G|242
8R6C|1|a|U|243
8R6C|1|a|A|244
8R6C|1|a|G|245
*
8R6C|1|a|C|253
8R6C|1|a|G|254
8R6C|1|a|A|255
8R6C|1|a|A|256
8R6C|1|a|C|257
8R6C|1|a|G|258

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain k

50S ribosomal protein L15