IL_8R6C_158

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAC*G(PSU)(PSU)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R6C_158 not in the Motif Atlas

Homologous match to IL_5J7L_343

Geometric discrepancy: 0.0552

The information below is about IL_5J7L_343

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8R6C|1|a|G|2588
8R6C|1|a|A|2589
8R6C|1|a|A|2590
8R6C|1|a|C|2591
*
8R6C|1|a|G|2603
8R6C|1|a|PSU|2604
8R6C|1|a|PSU|2605
8R6C|1|a|C|2606

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain c

Large ribosomal subunit protein uL2