IL_8R6C_180

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R6C_180 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0518

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8R6C|1|a|U|1851
8R6C|1|a|U|1852
8R6C|1|a|A|1853
8R6C|1|a|A|1854
8R6C|1|a|U|1855
8R6C|1|a|U|1856
8R6C|1|a|G|1857
8R6C|1|a|A|1858
8R6C|1|a|U|1859
8R6C|1|a|G|1860
*
8R6C|1|a|U|1882
8R6C|1|a|U|1883
8R6C|1|a|G|1884
8R6C|1|a|A|1885
8R6C|1|a|U|1886
8R6C|1|a|C|1887
8R6C|1|a|G|1888
8R6C|1|a|A|1889
8R6C|1|a|A|1890
8R6C|1|a|G|1891

Current chains

Chain a

23S ribosomal RNA

Nearby chains