IL_8R8M_012

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8R8M|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0956

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8R8M|1|A|G|147
8R8M|1|A|G|148
8R8M|1|A|A|149
8R8M|1|A|U|150
8R8M|1|A|A|151
8R8M|1|A|A|152
8R8M|1|A|C|153
*
8R8M|1|A|G|168
8R8M|1|A|C|169
8R8M|1|A|U|170
8R8M|1|A|A|171
8R8M|1|A|A|172
8R8M|1|A|U|173
8R8M|1|A|A|174
8R8M|1|A|C|175

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20