IL_8R8M_033

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

8R8M|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_033 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.043

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8R8M|1|A|U|662
8R8M|1|A|A|663
8R8M|1|A|G|664
8R8M|1|A|A|665
8R8M|1|A|G|666
*
8R8M|1|A|U|740
8R8M|1|A|G|741
8R8M|1|A|G|742
8R8M|1|A|A|743

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

30S ribosomal protein S6, fully modified isoform

Chain O

Small ribosomal subunit protein uS15

Chain R

Small ribosomal subunit protein bS18