3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_072 not in the Motif Atlas
Homologous match to IL_5J7L_251
Geometric discrepancy: 0.0421
The information below is about IL_5J7L_251
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

8R8M|1|a|C|239
8R8M|1|a|C|240
8R8M|1|a|A|241
8R8M|1|a|G|242
8R8M|1|a|U|243
8R8M|1|a|A|244
8R8M|1|a|G|245
*
8R8M|1|a|C|253
8R8M|1|a|G|254
8R8M|1|a|A|255
8R8M|1|a|A|256
8R8M|1|a|C|257
8R8M|1|a|G|258

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 2
Large ribosomal subunit protein bL35
Chain k
50S ribosomal protein L15

Coloring options:


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