3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UUAAC*GGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_079 not in the Motif Atlas
Homologous match to IL_5J7L_258
Geometric discrepancy: 0.0314
The information below is about IL_5J7L_258
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_66798.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8R8M|1|a|U|606
8R8M|1|a|U|607
8R8M|1|a|A|608
8R8M|1|a|A|609
8R8M|1|a|C|610
*
8R8M|1|a|G|618
8R8M|1|a|G|619
8R8M|1|a|G|620
8R8M|1|a|A|621
8R8M|1|a|G|622

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain e
Large ribosomal subunit protein uL4
Chain k
50S ribosomal protein L15

Coloring options:


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