IL_8R8M_081

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8R8M|1|a|G|801, 8R8M|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_081 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0526

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8R8M|1|a|G|674
8R8M|1|a|A|675
8R8M|1|a|A|676
8R8M|1|a|A|677
8R8M|1|a|C|678
*
8R8M|1|a|G|799
8R8M|1|a|A|800
8R8M|1|a|G|801
8R8M|1|a|A|802
8R8M|1|a|U|803
8R8M|1|a|A|804
8R8M|1|a|G|805
8R8M|1|a|C|806

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain k

50S ribosomal protein L15