3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_091 not in the Motif Atlas
Geometric match to IL_5J7L_270
Geometric discrepancy: 0.0505
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8R8M|1|a|G|856
8R8M|1|a|G|857
8R8M|1|a|G|858
8R8M|1|a|G|859
8R8M|1|a|U|860
8R8M|1|a|A|861
8R8M|1|a|G|862
*
8R8M|1|a|C|915
8R8M|1|a|G|916
8R8M|1|a|A|917
8R8M|1|a|A|918
8R8M|1|a|U|919
8R8M|1|a|A|920
8R8M|1|a|C|921

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain l
Large ribosomal subunit protein uL16
Chain v
Large ribosomal subunit protein bL27
Chain y
Large ribosomal subunit protein uL30

Coloring options:


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