3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UCCCAAAG*CA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_098 not in the Motif Atlas
Geometric match to IL_5J7L_278
Geometric discrepancy: 0.0385
The information below is about IL_5J7L_278
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

8R8M|1|a|U|1004
8R8M|1|a|C|1005
8R8M|1|a|C|1006
8R8M|1|a|C|1007
8R8M|1|a|A|1008
8R8M|1|a|A|1009
8R8M|1|a|A|1010
8R8M|1|a|G|1011
*
8R8M|1|a|C|1150
8R8M|1|a|A|1151

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain i
Large ribosomal subunit protein uL13
Chain p
Large ribosomal subunit protein bL20

Coloring options:


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