IL_8R8M_107

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8R8M|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_107 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0475

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8R8M|1|a|C|1208
8R8M|1|a|U|1209
8R8M|1|a|G|1210
8R8M|1|a|C|1211
8R8M|1|a|G|1212
8R8M|1|a|A|1213
8R8M|1|a|A|1214
8R8M|1|a|G|1215
*
8R8M|1|a|U|1234
8R8M|1|a|G|1235
8R8M|1|a|G|1236
8R8M|1|a|A|1237
8R8M|1|a|G|1238

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20