3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAAG*CCUGC
Length
9 nucleotides
Bulged bases
8R8M|1|a|U|1559
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_115 not in the Motif Atlas
Homologous match to IL_5J7L_296
Geometric discrepancy: 0.0689
The information below is about IL_5J7L_296
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_58112.2
Basepair signature
cWW-cWW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

8R8M|1|a|G|1432
8R8M|1|a|A|1433
8R8M|1|a|A|1434
8R8M|1|a|G|1435
*
8R8M|1|a|C|1557
8R8M|1|a|C|1558
8R8M|1|a|U|1559
8R8M|1|a|G|1560
8R8M|1|a|C|1561

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain c
Large ribosomal subunit protein uL2

Coloring options:


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