IL_8R8M_118

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

8R8M|1|a|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_118 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.0605

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8R8M|1|a|U|1468
8R8M|1|a|A|1469
8R8M|1|a|A|1470
8R8M|1|a|G|1471
*
8R8M|1|a|U|1520
8R8M|1|a|G|1521
8R8M|1|a|A|1522
8R8M|1|a|U|1523
8R8M|1|a|G|1524

Current chains

Chain a

23S ribosomal RNA

Nearby chains