3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CCGG*CG
Length
6 nucleotides
Bulged bases
8R8M|1|a|C|1838
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_132 not in the Motif Atlas
Homologous match to IL_5J7L_314
Geometric discrepancy: 0.1163
The information below is about IL_5J7L_314
Detailed Annotation
Minor groove platform, major groove intercalation
Broad Annotation
Minor groove platform, major groove intercalation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

8R8M|1|a|C|1837
8R8M|1|a|C|1838
8R8M|1|a|G|1839
8R8M|1|a|G|1840
*
8R8M|1|a|C|1902
8R8M|1|a|G|1903

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain c
Large ribosomal subunit protein uL2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2031 s