IL_8R8M_159

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_159 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2282

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

8R8M|1|a|C|2591
8R8M|1|a|G|2592
*
8R8M|1|a|C|2601
8R8M|1|a|A|2602
8R8M|1|a|G|2603

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain c

Large ribosomal subunit protein uL2