IL_8R8M_179

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_179 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0297

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8R8M|1|a|G|1666
8R8M|1|a|G|1667
8R8M|1|a|A|1668
8R8M|1|a|A|1669
8R8M|1|a|C|1670
8R8M|1|a|U|1671
8R8M|1|a|A|1672
8R8M|1|a|G|1673
8R8M|1|a|G|1674
*
8R8M|1|a|C|1990
8R8M|1|a|U|1991
8R8M|1|a|G|1992
8R8M|1|a|U|1993
8R8M|1|a|C|1994

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14