IL_8R8M_180

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_180 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0483

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8R8M|1|a|U|1851
8R8M|1|a|U|1852
8R8M|1|a|A|1853
8R8M|1|a|A|1854
8R8M|1|a|U|1855
8R8M|1|a|U|1856
8R8M|1|a|G|1857
8R8M|1|a|A|1858
8R8M|1|a|U|1859
8R8M|1|a|G|1860
*
8R8M|1|a|U|1882
8R8M|1|a|U|1883
8R8M|1|a|G|1884
8R8M|1|a|A|1885
8R8M|1|a|U|1886
8R8M|1|a|C|1887
8R8M|1|a|G|1888
8R8M|1|a|A|1889
8R8M|1|a|A|1890
8R8M|1|a|G|1891

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain Z

Transfer RNA; tRNA