IL_8RCL_116

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCL_116 not in the Motif Atlas

Homologous match to IL_5J7L_359

Geometric discrepancy: 0.1038

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8RCL|1|82|C|71
8RCL|1|82|G|72
8RCL|1|82|A|73
8RCL|1|82|U|74
8RCL|1|82|G|75
8RCL|1|82|G|76
8RCL|1|82|U|77
8RCL|1|82|A|78
8RCL|1|82|G|79
*
8RCL|1|82|C|97
8RCL|1|82|G|98
8RCL|1|82|A|99
8RCL|1|82|G|100
8RCL|1|82|A|101
8RCL|1|82|G|102
8RCL|1|82|U|103
8RCL|1|82|A|104
8RCL|1|82|G|105

Current chains

Chain 82

5S ribosomal RNA

Nearby chains

Chain 72

Large subunit ribosomal RNA; LSU rRNA

Chain h2

50S ribosomal protein L16