IL_8RCL_160

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8RCL|1|A1|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCL_160 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1972

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8RCL|1|A1|G|933
8RCL|1|A1|C|934
8RCL|1|A1|A|935
*
8RCL|1|A1|U|1380
8RCL|1|A1|U|1381
8RCL|1|A1|C|1382
8RCL|1|A1|C|1383
8RCL|1|A1|C|1384

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain G1

30S ribosomal protein S7

Chain I1

Small ribosomal subunit protein uS9

Chain W1

Transfer RNA; tRNA