IL_8RCL_202

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8RCL|1|A2|U|244, 8RCL|1|A2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCL_202 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1235

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8RCL|1|A2|G|242
8RCL|1|A2|A|243
8RCL|1|A2|U|244
8RCL|1|A2|U|245
8RCL|1|A2|A|246
8RCL|1|A2|G|247
*
8RCL|1|A2|C|277
8RCL|1|A2|G|278
8RCL|1|A2|A|279
8RCL|1|A2|C|280
8RCL|1|A2|G|281
8RCL|1|A2|A|282
8RCL|1|A2|U|283
8RCL|1|A2|C|284

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain L2

Small ribosomal subunit protein uS12

Chain Q2

Small ribosomal subunit protein uS17