IL_8RCL_220

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

8RCL|1|A2|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCL_220 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.0614

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8RCL|1|A2|U|662
8RCL|1|A2|A|663
8RCL|1|A2|G|664
8RCL|1|A2|A|665
8RCL|1|A2|G|666
*
8RCL|1|A2|U|740
8RCL|1|A2|G|741
8RCL|1|A2|G|742
8RCL|1|A2|A|743

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain F2

30S ribosomal protein S6

Chain O2

30S ribosomal protein S15

Chain R2

Small ribosomal subunit protein bS18