3D structure

PDB id
8RCL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli paused disome complex (Non-rotated disome interface class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.49 Å

Loop

Sequence
CGGAUU*AUGAAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RCL_246 not in the Motif Atlas
Geometric match to IL_4LFB_055
Geometric discrepancy: 0.1179
The information below is about IL_4LFB_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85536.2
Basepair signature
cWW-tSH-L-R-tHS-cWW-cWW
Number of instances in this motif group
8

Unit IDs

8RCL|1|A2|C|1303
8RCL|1|A2|G|1304
8RCL|1|A2|G|1305
8RCL|1|A2|A|1306
8RCL|1|A2|U|1307
8RCL|1|A2|U|1308
*
8RCL|1|A2|A|1329
8RCL|1|A2|U|1330
8RCL|1|A2|G|1331
8RCL|1|A2|A|1332
8RCL|1|A2|A|1333
8RCL|1|A2|G|1334

Current chains

Chain A2
16S ribosomal RNA

Nearby chains

Chain M2
Small ribosomal subunit protein uS13

Coloring options:


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