IL_8RCM_043

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

8RCM|1|72|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCM_043 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2136

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

8RCM|1|72|G|1087
8RCM|1|72|A|1088
8RCM|1|72|A|1089
8RCM|1|72|A|1090
8RCM|1|72|G|1091
*
8RCM|1|72|C|1100
8RCM|1|72|U|1101
8RCM|1|72|C|1102

Current chains

Chain 72

23S ribosomal RNA

Nearby chains