IL_8RCM_105

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCM_105 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.087

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8RCM|1|72|C|2652
8RCM|1|72|U|2653
8RCM|1|72|A|2654
8RCM|1|72|G|2655
8RCM|1|72|U|2656
8RCM|1|72|A|2657
8RCM|1|72|C|2658
*
8RCM|1|72|G|2663
8RCM|1|72|G|2664
8RCM|1|72|A|2665
8RCM|1|72|C|2666
8RCM|1|72|C|2667
8RCM|1|72|G|2668

Current chains

Chain 72

23S ribosomal RNA

Nearby chains