IL_8RCM_265

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCM_265 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0826

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8RCM|1|72|U|1851
8RCM|1|72|U|1852
8RCM|1|72|A|1853
8RCM|1|72|A|1854
8RCM|1|72|U|1855
8RCM|1|72|U|1856
8RCM|1|72|G|1857
8RCM|1|72|A|1858
8RCM|1|72|U|1859
8RCM|1|72|G|1860
*
8RCM|1|72|U|1882
8RCM|1|72|U|1883
8RCM|1|72|G|1884
8RCM|1|72|A|1885
8RCM|1|72|U|1886
8RCM|1|72|C|1887
8RCM|1|72|G|1888
8RCM|1|72|A|1889
8RCM|1|72|A|1890
8RCM|1|72|G|1891

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain X2

Transfer RNA; tRNA

Chain a2

Large ribosomal subunit protein uL1