IL_8RCS_015

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8RCS|1|72|G|801, 8RCS|1|72|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCS_015 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0771

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8RCS|1|72|G|674
8RCS|1|72|A|675
8RCS|1|72|A|676
8RCS|1|72|A|677
8RCS|1|72|C|678
*
8RCS|1|72|G|799
8RCS|1|72|A|800
8RCS|1|72|G|801
8RCS|1|72|A|802
8RCS|1|72|U|803
8RCS|1|72|A|804
8RCS|1|72|G|805
8RCS|1|72|C|806

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain o2

50S ribosomal protein L15