IL_8RCS_041

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

8RCS|1|72|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCS_041 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2176

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8RCS|1|72|G|1087
8RCS|1|72|A|1088
8RCS|1|72|A|1089
8RCS|1|72|A|1090
8RCS|1|72|G|1091
*
8RCS|1|72|C|1100
8RCS|1|72|U|1101
8RCS|1|72|C|1102

Current chains

Chain 72

23S ribosomal RNA

Nearby chains