IL_8RCS_087

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

8RCS|1|72|U|2111, 8RCS|1|72|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCS_087 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2176

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

8RCS|1|72|G|2110
8RCS|1|72|U|2111
8RCS|1|72|G|2112
8RCS|1|72|U|2113
8RCS|1|72|A|2114
8RCS|1|72|G|2115
8RCS|1|72|G|2116
8RCS|1|72|A|2117
8RCS|1|72|U|2118
8RCS|1|72|A|2119
8RCS|1|72|G|2120
*
8RCS|1|72|C|2178
8RCS|1|72|C|2179

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain W

Transfer RNA; tRNA

Chain a2

Large ribosomal subunit protein uL1