IL_8RCS_205

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8RCS|1|A2|U|244, 8RCS|1|A2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCS_205 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1321

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8RCS|1|A2|G|242
8RCS|1|A2|A|243
8RCS|1|A2|U|244
8RCS|1|A2|U|245
8RCS|1|A2|A|246
8RCS|1|A2|G|247
*
8RCS|1|A2|C|277
8RCS|1|A2|G|278
8RCS|1|A2|A|279
8RCS|1|A2|C|280
8RCS|1|A2|G|281
8RCS|1|A2|A|282
8RCS|1|A2|U|283
8RCS|1|A2|C|284

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain L2

Small ribosomal subunit protein uS12

Chain Q2

Small ribosomal subunit protein uS17