IL_8RCT_015

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8RCT|1|72|G|801, 8RCT|1|72|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCT_015 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0757

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8RCT|1|72|G|674
8RCT|1|72|A|675
8RCT|1|72|A|676
8RCT|1|72|A|677
8RCT|1|72|C|678
*
8RCT|1|72|G|799
8RCT|1|72|A|800
8RCT|1|72|G|801
8RCT|1|72|A|802
8RCT|1|72|U|803
8RCT|1|72|A|804
8RCT|1|72|G|805
8RCT|1|72|C|806

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain o2

50S ribosomal protein L15