IL_8RCT_087

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

GGUG*CACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGUG,CACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCT_087 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.374

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

8RCT|1|72|G|2120
8RCT|1|72|G|2121
8RCT|1|72|U|2122
8RCT|1|72|G|2123
*
8RCT|1|72|C|2175
8RCT|1|72|A|2176
8RCT|1|72|C|2177
8RCT|1|72|C|2178

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain W

Transfer RNA; tRNA

Chain a2

Large ribosomal subunit protein uL1