IL_8RD8_012
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CAAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_012 not in the Motif Atlas
- Homologous match to IL_5J7L_251
- Geometric discrepancy: 0.0842
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8RD8|1|Z2|C|236
8RD8|1|Z2|A|237
8RD8|1|Z2|A|238
8RD8|1|Z2|G|239
8RD8|1|Z2|U|240
8RD8|1|Z2|A|241
8RD8|1|Z2|G|242
*
8RD8|1|Z2|C|250
8RD8|1|Z2|G|251
8RD8|1|Z2|A|252
8RD8|1|Z2|A|253
8RD8|1|Z2|C|254
8RD8|1|Z2|G|255
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Kd
- Large ribosomal subunit protein uL15
- Chain dh
- Large ribosomal subunit protein bL35
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