IL_8RD8_014

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AAUG*CGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_014 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.1338

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

8RD8|1|Z2|A|270
8RD8|1|Z2|A|271
8RD8|1|Z2|U|272
8RD8|1|Z2|G|273
*
8RD8|1|Z2|C|341
8RD8|1|Z2|G|342
8RD8|1|Z2|U|343
8RD8|1|Z2|U|344

Current chains

Chain Z2

23S rRNA

Nearby chains