IL_8RD8_020

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_020 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.0944

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8RD8|1|Z2|U|591
8RD8|1|Z2|U|592
8RD8|1|Z2|A|593
8RD8|1|Z2|A|594
8RD8|1|Z2|C|595
*
8RD8|1|Z2|G|603
8RD8|1|Z2|G|604
8RD8|1|Z2|G|605
8RD8|1|Z2|A|606
8RD8|1|Z2|G|607

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain E9

Large ribosomal subunit protein uL4

Chain Kd

Large ribosomal subunit protein uL15

Chain dh

Large ribosomal subunit protein bL35