IL_8RD8_032

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_032 not in the Motif Atlas

Homologous match to IL_5J7L_269

Geometric discrepancy: 0.0927

The information below is about IL_5J7L_269

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8RD8|1|Z2|C|835
8RD8|1|Z2|C|836
*
8RD8|1|Z2|G|911
8RD8|1|Z2|A|912
8RD8|1|Z2|G|913

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain YW

Large ribosomal subunit protein uL30