IL_8RD8_039
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CCCCAAAU*AG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_039 not in the Motif Atlas
- Geometric match to IL_5J7L_278
- Geometric discrepancy: 0.088
- The information below is about IL_5J7L_278
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8RD8|1|Z2|C|988
8RD8|1|Z2|C|989
8RD8|1|Z2|C|990
8RD8|1|Z2|C|991
8RD8|1|Z2|A|992
8RD8|1|Z2|A|993
8RD8|1|Z2|A|994
8RD8|1|Z2|U|995
*
8RD8|1|Z2|A|1135
8RD8|1|Z2|G|1136
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain IX
- Large ribosomal subunit protein uL13
- Chain PO
- Large ribosomal subunit protein bL20
Coloring options: