IL_8RD8_044

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_044 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.1226

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8RD8|1|Z2|G|1022
8RD8|1|Z2|A|1023
8RD8|1|Z2|A|1024
8RD8|1|Z2|G|1025
*
8RD8|1|Z2|C|1098
8RD8|1|Z2|G|1099
8RD8|1|Z2|G|1100
8RD8|1|Z2|C|1101

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain GR

Large ribosomal subunit protein uL6

Chain Lg

Large ribosomal subunit protein uL16

Chain UC

Large ribosomal subunit protein bL25