IL_8RD8_055

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_055 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.0593

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8RD8|1|Z2|C|1335
8RD8|1|Z2|U|1336
8RD8|1|Z2|A|1337
8RD8|1|Z2|A|1338
8RD8|1|Z2|G|1339
*
8RD8|1|Z2|C|1360
8RD8|1|Z2|G|1361
8RD8|1|Z2|A|1362
8RD8|1|Z2|U|1363
8RD8|1|Z2|G|1364

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein bL34

Chain Cl

Large ribosomal subunit protein uL2