IL_8RD8_058

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAAG*CAUGC

Length

9 nucleotides

Bulged bases

8RD8|1|Z2|U|1547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_058 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2274

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8RD8|1|Z2|G|1416
8RD8|1|Z2|A|1417
8RD8|1|Z2|A|1418
8RD8|1|Z2|G|1419
*
8RD8|1|Z2|C|1545
8RD8|1|Z2|A|1546
8RD8|1|Z2|U|1547
8RD8|1|Z2|G|1548
8RD8|1|Z2|C|1549

Current chains

Chain Z2

23S rRNA

Nearby chains