IL_8RD8_086

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAG*CAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_086 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.2191

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8RD8|1|Z2|C|2280
8RD8|1|Z2|A|2281
8RD8|1|Z2|G|2282
*
8RD8|1|Z2|C|2300
8RD8|1|Z2|A|2301
8RD8|1|Z2|U|2302
8RD8|1|Z2|A|2303
8RD8|1|Z2|G|2304

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain D8

5S ribosomal RNA; 5S rRNA

Chain F7

Large ribosomal subunit protein uL5

Chain VH

Large ribosomal subunit protein bL27