IL_8RD8_099
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UUGAG*CAAGAUUAG
- Length
- 14 nucleotides
- Bulged bases
- 8RD8|1|Z2|U|2763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_099 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.0877
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8RD8|1|Z2|U|2619
8RD8|1|Z2|U|2620
8RD8|1|Z2|G|2621
8RD8|1|Z2|A|2622
8RD8|1|Z2|G|2623
*
8RD8|1|Z2|C|2757
8RD8|1|Z2|A|2758
8RD8|1|Z2|A|2759
8RD8|1|Z2|G|2760
8RD8|1|Z2|A|2761
8RD8|1|Z2|U|2762
8RD8|1|Z2|U|2763
8RD8|1|Z2|A|2764
8RD8|1|Z2|G|2765
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Af
- Large ribosomal subunit protein uL3
- Chain IX
- Large ribosomal subunit protein uL13
Coloring options: