IL_8RD8_101
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CCUCU*ACG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_101 not in the Motif Atlas
- Homologous match to IL_7RQB_104
- Geometric discrepancy: 0.069
- The information below is about IL_7RQB_104
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.6
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
8RD8|1|Z2|C|2663
8RD8|1|Z2|C|2664
8RD8|1|Z2|U|2665
8RD8|1|Z2|C|2666
8RD8|1|Z2|U|2667
*
8RD8|1|Z2|A|2708
8RD8|1|Z2|C|2709
8RD8|1|Z2|G|2710
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Af
- Large ribosomal subunit protein uL3
- Chain Je
- Large ribosomal subunit protein uL14
- Chain MB
- Large ribosomal subunit protein bL17
- Chain Oi
- Large ribosomal subunit protein bL19
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