IL_8RD8_123

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GG*UGAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_123 not in the Motif Atlas

Homologous match to IL_5J7L_016

Geometric discrepancy: 0.1809

The information below is about IL_5J7L_016

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

8RD8|1|iN|G|335
8RD8|1|iN|G|336
*
8RD8|1|iN|U|347
8RD8|1|iN|G|348
8RD8|1|iN|A|349
8RD8|1|iN|U|350
8RD8|1|iN|C|351

Current chains

Chain iN

16S rRNA

Nearby chains

Chain L6

Small ribosomal subunit protein uS12

Chain Pj

Small ribosomal subunit protein bS16