IL_8RD8_145

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_145 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0593

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8RD8|1|iN|G|931
8RD8|1|iN|G|932
8RD8|1|iN|A|933
8RD8|1|iN|G|934
8RD8|1|iN|U|935
8RD8|1|iN|A|936
8RD8|1|iN|C|937
8RD8|1|iN|G|938
*
8RD8|1|iN|U|949
8RD8|1|iN|A|950
8RD8|1|iN|A|951
8RD8|1|iN|A|952
8RD8|1|iN|A|953
8RD8|1|iN|C|954

Current chains

Chain iN

16S rRNA

Nearby chains

Chain L6

Small ribosomal subunit protein uS12