IL_8RD8_148

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8RD8|1|iN|C|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_148 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.173

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8RD8|1|iN|G|977
8RD8|1|iN|C|978
8RD8|1|iN|A|979
*
8RD8|1|iN|U|1425
8RD8|1|iN|U|1426
8RD8|1|iN|C|1427
8RD8|1|iN|C|1428
8RD8|1|iN|C|1429

Current chains

Chain iN

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S30

Chain F

Small ribosomal subunit protein uS9

Chain GS

Small ribosomal subunit protein uS7