IL_8RD8_150

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_150 not in the Motif Atlas

Geometric match to IL_4LFB_039

Geometric discrepancy: 0.2113

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8RD8|1|iN|G|1037
8RD8|1|iN|A|1038
8RD8|1|iN|C|1039
8RD8|1|iN|A|1040
8RD8|1|iN|U|1041
*
8RD8|1|iN|A|1088
8RD8|1|iN|C|1089

Current chains

Chain iN

16S rRNA

Nearby chains

Chain CT

Small ribosomal subunit protein uS3

Chain HK

Small ribosomal subunit protein uS14